Between 1639 and 1653 , Scotland was involved Cause_to_be_included in the Wars of the Three Kingdoms , a series of wars Hostile_encounter starting Process_start with the Bishops Wars ( between Scotland and England ) , the Irish Rebellion of 1641 , the English Civil War ( and its extension in Scotland ) , the Irish Confederate Wars , and finally the subjugation of Ireland and Scotland by the English Roundhead New Model Army .